This class manages a physical model (PML) CamiTK component. More...

#include <PMLComponent.h>

Inheritance diagram for PMLComponent:

Collaboration diagram for PMLComponent:

Public Member Functions
virtual QPixmap	getIcon ()
	get the pixmap for physical model component More...

	PMLComponent (const QString &file)
	Construct the PML component directly from the .pml xml file. More...

	PMLComponent (PhysicalModel *p, const QString &originalFile)
	Create the PML component directly from the PhysicalModel (also have to give the original pml filename) More...

virtual void	setSelected (const bool b, const bool recursive=true)
	Update the selection flag (this method is overridden in order to show the default modeling action when the component is selected for the first time). More...

virtual void	updateProperty (QString name, QVariant value)
	update top-level properties and synchronize the physical model values More...

virtual	~PMLComponent ()
	destructor More...

Specific methods for PML component
Return the Physical Model object associated to the component
PhysicalModel *	getPhysicalModel ()

vtkIdType	getPointId (const Atom *a)
	get the point Id from the corresponding atom, this is the opposite of pml->getAtom(id) More...

void	init ()
	initialize information (properties) and geometric representation from the physical model More...

Selection methods
void	selectCell (Cell *cell, bool showAtomGlyph)
	Select the given cell in the 3D structure. More...

void	selectAtom (const Atom *atom)
	Select the given atom in the 3D structure. More...

void	selectSC (StructuralComponent *sc, bool showAtomGlyph)
	Select the given structural component in the 3D structure by highlighting all its atoms and cells. More...

void	selectMC (MultiComponent *mc, bool showAtomGlyph)
	Select the given multi component in the 3D structure by highlighting all its structural components. More...

void	unselectItems ()
	Unselect all the SC, MC, Atoms and Cells previously selected on the 3D structure. More...

void	updateSelection ()
	Update the POINTS and CELLS selection for the whole 3D structure by telling the corresponding extractors new vtkIds have been added to the selection lists. More...

void	refreshDisplay ()
	Refresh the display of the component according to the selected 3D items by the user. More...

virtual int	addSelection (const QString &name, int fieldType, int contentType, vtkSmartPointer< vtkAbstractArray > array, camitk::MeshSelectionModel::InsertionPolicy policy=camitk::MeshSelectionModel::REPLACE)
	Add a selection (inherited from MeshComponent inorder to show a glyph on selected atoms). More...

Public Member Functions inherited from camitk::MeshComponent
void	cellPicked (vtkIdType cellId, bool) override
	reimplemented to save the last pick point id More...

unsigned int	getNumberOfPropertyWidget () override
	there is more than one property widgets (to view as tabs in the property explorer) More...

vtkIdType	getPickedCellId ()
	get the last pick point id, More...

vtkIdType	getPickedPointId ()
	get the last pick point id, More...

QWidget *	getPropertyWidgetAt (unsigned int i=0) override
	the proprety widgets are: default property widget, selection view and data view More...

	MeshComponent (Component *parentComponent, vtkSmartPointer< vtkPointSet > aPointSet, const QString &name)
	Creates a MeshComponent as a sub component of another Component using a vtkPointSet (and instantiate its 3D representation). More...

	MeshComponent (const QString &file)
	Creates a top-level MeshComponent from a file. More...

	MeshComponent (vtkSmartPointer< vtkPointSet > aPointSet, const QString &name)
	Creates a top-level MeshComponent from a vtkPointSet (and instantiate its 3D representation). More...

void	pointPicked (vtkIdType pointId, bool) override
	reimplemented to save the last pick point id More...

	~MeshComponent () override
	Destructor. More...

QList< vtkSmartPointer< vtkSelectionNode > > &	getSelections ()
	Get the selection list. More...

unsigned int	getNumberOfSelections () const
	Get the number of selections. More...

vtkSmartPointer< vtkSelection >	getActiveSelection () const
	Get active selections. More...

vtkSmartPointer< vtkSelectionNode >	getSelection (const QString &name) const
	Get a selection from its name. More...

vtkSmartPointer< vtkSelectionNode >	getSelectionAt (unsigned int index) const
	Get a selection from its index in the list. More...

int	getSelectionIndex (const QString &name) const
	Get the selection index in the list from its name. More...

virtual int	addToSelectedSelection (int fieldType, int contentType, vtkSmartPointer< vtkAbstractArray > array, MeshSelectionModel::InsertionPolicy policy=MeshSelectionModel::REPLACE)
	Add a selection to the currently selected selection. More...

int	getNumberOfDataArray (int fieldFlag=POINTS\|CELLS)
	Get the number of data arrays of a given type without taking the specific representation into account. More...

vtkSmartPointer< vtkDataArray >	getDataArray (FieldType fieldType, const QString &arrayName)
	Get the data array of specified field type and name. More...

vtkSmartPointer< vtkDataArray >	getDataArray (FieldType fieldType, int index)
	Get the data array of specified field type and index. More...

void	addDataArray (FieldType fieldType, const QString &name, vtkSmartPointer< vtkDataArray > data)
	Add a data array. More...

void	removeDataArray (FieldType fieldType, const QString &name)
	Remove a data array. More...

void	addPointData (const QString &name, vtkSmartPointer< vtkDataArray > data)
	Add a data array linked to the points. More...

void	addCellData (const QString &name, vtkSmartPointer< vtkDataArray > data)
	Add a data array linked to the cells. More...

MeshDataModel *	getDataModel ()
	Returns the current data view model (model as the M in Qt MVC design pattern) More...

vtkSmartPointer< vtkFieldData >	getFieldData (FieldType)
	Returns the corresponding vtkFieldData (point data, cell data or field data) More...

bool	getDataRepresentationVisibility (FieldType, const QString &)
	get the current visibility status of a given data (identified with its name) of a given field type More...

void	setDataRepresentationVisibility (FieldType, const QString &, bool)
	set the visibility of a given representation for a given data (identified with its name) of a given field type (create it if needed) More...

void	setDataRepresentationOff (int dataType=SCALARS\|VECTORS\|TENSORS)
	hide all the data representation of a given data type (hide all by default) More...

void	setVectorRepresentation (VectorRepresentation)
	set the current mode of visualisation of 3D data vector (default is ARROW) More...

Public Member Functions inherited from camitk::Component
	Component (QString file, QString name, Representation rep=NO_REPRESENTATION)
	Component constructor for top-level component (please use the other constructor for sub-level components). More...

	Component (Component *parentComponent, const QString &name, Representation rep=NO_REPRESENTATION)
	Component constructor for a Component that is a child of another Component You should not use this constructor for a top-level component. More...

	~Component () override
	default destructor. More...

Representation	getRepresentation () const
	return the type of representation concretely implemented by this Component in the InteractiveViewer. More...

bool	isTopLevel () const
	return true if this component is a top-level component More...

Component *	getParentComponent ()
	get the parent component More...

Component *	getTopLevelComponent ()
	get the top-level component More...

InterfaceFrame *	getFrame ()
	get the associated frame More...

virtual void	setModified (bool modified=true)
	set the modified flag More...

virtual bool	getModified () const
	set the modified flag More...

virtual void	setVisibility (QString, bool)
	set the visibility inside the viewer of the given name (the viewer needs to be a registered viewer) More...

virtual bool	getVisibility (QString) const
	get the visibility inside the viewer of the given name More...

virtual void	refresh ()
	refresh all the viewer that are currently displaying this Component At the end the InterfaceNode modification flag is reset. More...

virtual bool	isSelected () const
	Check if this data component is selected. More...

const QString	getFileName () const
	get the file name where the data have to be stored/were stored More...

void	setFileName (const QString &)
	set the file name where the data have to be stored More...

bool	event (QEvent *e) override
	Overriden from QObject, this one is only intercepting signal for dynamic property changed (see constructor). More...

QMenu *	getActionMenu ()
	Get a QMenu that contains all the action that can be applied to this component. More...

QStringList	getHierarchy () const override

bool	isInstanceOf (QString className) const override
	Assert that a Component instance really inherits from a given className. More...

QObject *	getPropertyObject () override
	Get the property object that could be understood by PropertyEditor. More...

void	setIndexOfPropertyExplorerTab (unsigned int index) override final
	Set the index of the tab in the ProperlyExplorer to select for display. More...

unsigned int	getIndexOfPropertyExplorerTab () override
	Get the index of the tab in the ProperlyExplorer to select for display. More...

Q_INVOKABLE camitk::Property *	getProperty (QString name) override
	Get a Property given its name. More...

bool	addProperty (Property *) override
	Add a new CamiTK property to the component. More...

void	removeChild (InterfaceNode *) override
	remove a child node. More...

void	setParent (InterfaceNode *) override
	set the parent Component. More...

bool	doubleClicked () override
	This method is called each time the InterfaceNode is double clicked by the user. More...

void	addChild (InterfaceNode *) override
	add a child Component (sub item in the hierarchy), and modify the child's parent to be equal to this instance More...

void	attachChild (InterfaceNode *) override
	add a child Component (but leave its parent unchanged) More...

void	deleteChildren () override final
	delete all sub Component, but do not delete the pointer (only the top-level component has the right to do that) More...

QString	getName () const override
	get the name to be displayed More...

void	setName (const QString &) override
	set the name to be displayed More...

const ComponentList &	getChildren () override
	get the list of the InterfaceNode children (sub items in the hierarchy) More...

InterfaceNode *	getParent () override
	get the parent Component More...

void	setNodeModified (bool) override final
	Set up the node modification flag. More...

bool	getNodeModified () const override
	Get the current modification flag. More...

bool	inItalic () const override
	A component name is not displayed in italic by default. More...

QMenu *	getPopupMenu (QWidget *parent=nullptr) override
	get the popup menu to display (always return nullptr, overwrite this method if you want to give here you own popup) More...

const QString	getLabel () const override

void	setLabel (QString newName) override
	set the string used to display the label, do the same as setName More...

	delegateGet0 (myGeometry, getPointSet, vtkSmartPointer< vtkPointSet >) delegate1(myGeometry

vtkSmartPointer< vtkPointSet >	delegate1 (myGeometry, setPointData, vtkSmartPointer< vtkDataArray >) delegateConstGet0(myGeometry

vtkSmartPointer< vtkPointSet > vtkSmartPointer< vtkAlgorithmOutput >	delegate1 (myGeometry, setDataConnection, vtkSmartPointer< vtkAlgorithmOutput >) delegateGet1(myGeometry

vtkSmartPointer< vtkPointSet > vtkSmartPointer< vtkAlgorithmOutput > const RenderingModes vtkSmartPointer< vtkProp >	getProp (const QString &param) override
	Return the vtkProp (actors, volumes and annotations) corresponding to the given name. More...

unsigned int	getNumberOfProp () const override
	return the number of additional prop More...

vtkSmartPointer< vtkProp >	getProp (unsigned int index) override
	return an additional prop by its index More...

bool	addProp (const QString &name, vtkSmartPointer< vtkProp > prop) override
	insert an additional prop, defining it by its name (default visibility = false) More...

bool	removeProp (const QString &name) override
	remove a given additional prop. More...

void	getBounds (double *bounds) override
	compute the object's bounding box [xmin,xmax, ymin,ymax, zmin,zmax], see Component.cpp More...

double	getBoundingRadius () override
	compute the object's bounding sphere radius, More...

	delegate4 (myGeometry, setPointPosition, const unsigned int, const double, const double, const double) delegateAndInvokeChildren1(myGeometry

const const RenderingModes InterfaceGeometry::RenderingModes	getRenderingModes () const override
	see Component.cpp More...

	delegateAndInvokeChildren1 (myGeometry, setEnhancedModes, const EnhancedModes) virtual const EnhancedModes getEnhancedModes() const override

	delegateAndInvokeChildren1Array (myGeometry, setActorColor, const RenderingModes, double, 4) delegateAndInvokeChildren4(myGeometry

const const const const double void	getActorColor (const RenderingModes, double[4]) override
	see Component.cpp More...

	delegateAndInvokeChildren3 (myGeometry, setColor, const double, const double, const double) delegateAndInvokeChildren4(myGeometry

const const const const double	delegateAndInvokeChildren2 (myGeometry, setActorOpacity, const RenderingModes, const double) delegateConstGet1(myGeometry

const const const const double const RenderingModes	delegateAndInvokeChildren1 (myGeometry, setOpacity, const double) delegate2(myGeometry

const const const const double const RenderingModes double	delegate1 (myGeometry, setTexture, vtkSmartPointer< vtkTexture >) void setGlyphType(const GlyphTypes type

	delegate1 (myGeometry, setLinesAsTubes, bool) delegate1(myGeometry

	delegateConstGet0 (mySlice, getImageData, vtkSmartPointer< vtkImageData >) delegate1(mySlice

vtkSmartPointer< vtkImageData >	delegateConstGet0 (mySlice, get2DImageActor, vtkSmartPointer< vtkImageActor >) delegateConstGet0(mySlice

vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor >	delegateConstGet0 (mySlice, getPickPlaneActor, vtkSmartPointer< vtkActor >) delegateGet0(mySlice

vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor >	delegate3 (mySlice, pixelPicked, double, double, double) delegate0(mySlice

vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane	delegate1 (mySlice, setSlice, int) delegate3(mySlice

vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double	delegateConstGet0 (mySlice, getNumberOfColors, int) delegate3(mySlice

vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double double	delegate1 (mySlice, setImageWorldTransform, vtkSmartPointer< vtkTransform >) delegate1(mySlice

vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double double vtkSmartPointer< vtkTransform > int	getNumberOfSlices () const override
	see Component.cpp More...

int	getSlice () const override
	see Component.cpp More...

const QString &	getFrameName () const override
	Hierarchy accessors / Modifyers. More...

	delegate1 (myFrame, setFrameName, QString) InterfaceFrame *getParentFrame() const override

void	setParentFrame (InterfaceFrame *frame, bool keepTransform=true) override
	Set the parent frame and update or not its transform during the parent transition. More...

const QVector< InterfaceFrame * > &	getChildrenFrame () const override
	Get the Children Frames from the current Frame in the Frame Hierarchy The Frame hierarchy may not be the same as the Component Hierarchy. More...

const vtkSmartPointer< vtkTransform >	getTransformFromWorld () const override
	Transforms accessors / Modifyers. More...

const vtkSmartPointer< vtkTransform >	getTransform () const override
	Get the transformation with respect to the parent frame. More...

const vtkSmartPointer< vtkTransform >	getTransformFromFrame (InterfaceFrame *frame) const override
	Compute the transformation from any other frame to the current frame. More...

	delegate1 (myFrame, setTransform, vtkSmartPointer< vtkTransform >) delegate0(myFrame

resetTransform	delegate3 (myFrame, translate, double, double, double) delegate3(myFrame

resetTransform double	delegate3 (myFrame, rotateVTK, double, double, double) delegate3(myFrame

resetTransform double double	delegate3 (myFrame, setTransformTranslationVTK, double, double, double) delegate3(myFrame

resetTransform double double double	delegate3 (myFrame, setTransformRotationVTK, double, double, double) vtkSmartPointer< vtkAxesActor > getFrameAxisActor() override

	delegate2 (myFrame, setFrameVisibility, QString, bool) bool getFrameVisibility(QString) const override

	delegate1 (myFrame, addFrameChild, InterfaceFrame *) delegate1(myFrame

Public Member Functions inherited from camitk::InterfaceProperty
	~InterfaceProperty ()=default
	empty virtual destructor, to avoid memory leak More...

Public Member Functions inherited from camitk::InterfaceNode
virtual	~InterfaceNode ()=default
	empty virtual destructor, to avoid memory leak More...

Public Member Functions inherited from camitk::InterfaceGeometry
virtual	~InterfaceGeometry ()=default
	empty virtual destructor, to avoid memory leak More...

virtual vtkSmartPointer< vtkPointSet >	getPointSet ()=0

virtual void	setPointSet (vtkSmartPointer< vtkPointSet >)=0
	set the low-level data set. More...

virtual void	setPointData (vtkSmartPointer< vtkDataArray >)=0
	set the point data (may contains a lookup table). More...

virtual void	setMeshWorldTransform (vtkSmartPointer< vtkTransform >)=0
	set the transformation for 3D representation More...

virtual vtkSmartPointer< vtkAlgorithmOutput >	getDataPort () const =0
	get the custom algorithm pipeline input. More...

virtual void	setDataConnection (vtkSmartPointer< vtkAlgorithmOutput >)=0
	Set/reset the connection for the InterfaceGeometry internal algorithm. More...

virtual void	setTexture (vtkSmartPointer< vtkTexture >)=0
	Set a texture to this object. More...

virtual vtkSmartPointer< vtkActor >	getActor (const RenderingModes)=0
	Return the actor for the representation mode, NULL if the actor doesn't exist. More...

virtual void	setPointPosition (const unsigned int orderNumber, const double x, const double y, const double z)=0
	set a given point position More...

virtual void	setRenderingModes (const RenderingModes)=0

virtual void	setEnhancedModes (const EnhancedModes)=0
	set the enhanced mode More...

virtual const EnhancedModes	getEnhancedModes () const =0
	get the current enhanced mode More...

virtual void	setActorColor (const RenderingModes, double *color)=0
	Set the color of given representation modes. More...

virtual void	setActorColor (const RenderingModes, const double, const double, const double)=0
	Set the color of given representation modes. More...

virtual void	getActorColor (const RenderingModes mode, double *color)=0
	Get the color of given representation modes in the second parameter. More...

virtual void	setColor (const double, const double, const double)=0
	Set an (r,g,b) color to all representation modes, without changing the opacity. More...

virtual void	setColor (const double, const double, const double, const double)=0
	Set an (r,g,b,a) color to all representation modes. More...

virtual void	setActorOpacity (const RenderingModes, const double)=0
	Set the opacity of this representation modes. WARNING color field (surfaceColor, ...) are not modified! More...

virtual double	getActorOpacity (const RenderingModes) const =0
	Return the opacity of a given renderng mode. More...

virtual void	setOpacity (const double)=0
	Set the opacity of this object. WARNING color field (surfaceColor, ...) are not modified! More...

virtual void	setMapperScalarRange (double min, double max)=0
	Set the mapper scalar range. More...

virtual void	setGlyphType (const GlyphTypes type, const double size=0.0)=0
	Set the glyph type (a glyph is a geometric representation attached to every point in the input dataset). More...

virtual void	setLinesAsTubes (bool)=0
	set the lines as tubes (works only for vtkDataSet representation that contains lines) More...

Public Member Functions inherited from camitk::InterfaceBitMap
virtual vtkSmartPointer< vtkImageActor >	get2DImageActor () const =0
	Return the vtkImageActor (vtkProp) representing a slice to be displayed in 2D viewers. More...

virtual vtkSmartPointer< vtkImageActor >	get3DImageActor () const =0
	Return the vtkImageActor (vtkProp) representing a slice to be displayed in 3D viewers. More...

virtual vtkSmartPointer< vtkImageData >	getImageData () const =0
	Returns the encapsultaed data structure: the image as a vtkImageData. More...

virtual int	getNumberOfColors () const =0
	Return the number of colors in the images. More...

virtual vtkSmartPointer< vtkActor >	getPickPlaneActor () const =0
	Return the vtkActor used to pick pixels in the slices. More...

virtual vtkSmartPointer< vtkActor >	getPixelActor ()=0
	Return the vtkActor used to pick pixels in the slices. More...

virtual void	pixelPicked (double, double, double)=0
	This method is called when the associated plane has been picked in the InteractiveViewer, the given coordinates is position where the plane was picked. More...

virtual void	setArbitraryTransform (vtkSmartPointer< vtkTransform >)=0
	Set the pointer to the image transformation. More...

virtual void	setImageWorldTransform (vtkSmartPointer< vtkTransform >)=0
	set the transformation for 3D image representation More...

virtual void	setOriginalVolume (vtkSmartPointer< vtkImageData >)=0
	set the original volume image data (the source vtkImageData before any reslice) and refresh the vtk pipeline More...

virtual void	setPixelRealPosition (double, double, double)=0
	move the pixel selection green indicator (pixelActor) to the given real position More...

virtual void	setSlice (double x, double y, double z)=0
	Set the slice corresponding to the given image coordinates (in RAI convention) More...

virtual void	setSlice (int s)=0
	Set the current slice index. More...

virtual void	updatePickPlane ()=0
	update the position of the plane surrounding the currently selected slice More...

virtual	~InterfaceBitMap ()=default
	virtual destructor More...

Public Member Functions inherited from camitk::InterfaceFrame
virtual void	addFrameChild (InterfaceFrame *frame)=0
	Add the input frame as a child of the current frame. More...

virtual vtkSmartPointer< vtkAxesActor >	getFrameAxisActor ()=0
	Gives the 3D representation of the frame (based on xyz arrows) More...

virtual bool	getFrameVisibility (QString) const =0
	Get the Component Frame visibility for a given viewer. More...

virtual void	removeFrameChild (InterfaceFrame *frame)=0
	Remove the input frame as a child of the current frame. More...

virtual void	setFrameVisibility (QString, bool)=0
	Set the Component Frame visible for a given viewer. More...

virtual	~InterfaceFrame ()=default
	empty virtual destructor, to avoid memory leak More...

virtual void	setFrameName (QString name)=0
	Set the Frame Unique identifyer. More...

virtual InterfaceFrame *	getParentFrame () const =0
	Get the parent frame. More...

virtual void	setTransform (vtkSmartPointer< vtkTransform > transform)=0
	Set the current input frame position (according to its parent Frame) More...

virtual void	resetTransform ()=0
	Set the current frame transform to identity. More...

virtual void	translate (double x, double y, double z)=0
	Apply a translation relative to the current position. More...

virtual void	rotate (double aroundX, double aroundY, double aroundZ)=0
	Apply rotations relative to the current position in the alphabetical order (X, Y, Z). More...

virtual void	rotateVTK (double aroundX, double aroundY, double aroundZ)=0
	Apply a rotation relative to the current position, using the VTK rotation order (Z, X, Y) More...

virtual void	setTransformTranslation (double x, double y, double z)=0
	Set the translation part of the 3D space transformation of the current frame. More...

virtual void	setTransformTranslationVTK (double x, double y, double z)=0
	Set the translation part of the 3D space transformation of the current frame. More...

virtual void	setTransformRotation (double aroundX, double aroundY, double aroundZ)=0
	Set the rotation part of the 3D space transformation of the current frame. More...

virtual void	setTransformRotationVTK (double aroundX, double aroundY, double aroundZ)=0
	Set the rotation part of the 3D space transformation of the current frame. More...

Protected Member Functions
virtual void	initDynamicProperties ()
	create and initialize dynamic properties using the global xml attributes from the PhysicalModel object More...

Protected Member Functions inherited from camitk::MeshComponent
void	initData ()
	initialize data More...

void	initDynamicProperties ()
	create and initialize dynamic properties More...

void	initRepresentation (vtkSmartPointer< vtkPointSet >)

void	initSelection ()
	initialize selections More...

Private Attributes
bool	neverSelected
	the first selection should trigger the pml exporer action (default action) More...

PhysicalModel *	physicalModel
	The library pml object that uses pmlschema to read the pml information for the xml file. More...

Static Private Attributes
static QPixmap *	myPixmap = nullptr
	the PMLComponent icon More...

3D structure creation
vtkSmartPointer< vtkPoints >	thePoints
	The 3D VTK cloud points of the atoms read. More...

vtkSmartPointer< vtkUnstructuredGrid >	mainGrid
	The 3D grid containing all the cells of the PML. More...

std::AtomPointIdMap	atomPointIdMap
	the Atom / vtkPoint Id map More...

void	create3DStructure ()
	Create the 3D VTK structure representing the mesh. More...

void	parseMultiComponent (MultiComponent *mc)
	Create the 3D structure of the given MultiComponent and its children (recursively). More...

vtkSmartPointer< vtkCell >	cellToVTK (Cell *cell)
	Create a 3D vtkCell corresponding to a structural component's cell. More...

vtkSmartPointer< vtkPolyVertex >	atomSCToVTK (StructuralComponent *sc)
	Create a 3D vtkPolyVertex of a structural component which ONLY contains atoms ref. More...

3D structure element selection
vtkSmartPointer< vtkIdTypeArray >	selectedAtomIdArray
	The vtkIdTypeArray for atom selection (contains all the id array that corresponds to a selected atom) More...

vtkSmartPointer< vtkSelection >	selectedAtomSelection
	The vtkSelection for atom selection. More...

QMap< QString, vtkSmartPointer< vtkIdTypeArray > >	scCellIdArrayMap
	The association structural component <-> vtkIdTypeArray for Cells selection. More...

QMap< QString, vtkSmartPointer< vtkSelection > >	scCellSelectionMap
	The association structural component <-> vtkSelection for Cells selection. More...

void	createCellSelectionVTKPipeline (const StructuralComponent *sc)
	Create a new VTK selection pipeline (selection, extractor, mapper, actor) for a given SC if it does not allready exists. More...

void	createAtomSelectionVTKPipeline ()
	Create the VTK selection pipeline (selection, extractor, mapper, actor) needed to represent the selection of atoms. More...

Additional Inherited Members
Public Types inherited from camitk::MeshComponent
enum	DataType { SCALARS = 1, VECTORS = 2, TENSORS = 4, OTHERS = 8 }

enum	FieldType { POINTS = 1, CELLS = 2, MESH = 4 }

enum	SpecificRepresentation { VECTOR_3D, NORM, FIRST_COMPONENT, SECOND_COMPONENT, THIRD_COMPONENT }

enum	VectorRepresentation { HEDGE_HOG, ARROW, UNSCALED_ARROW }

Public Types inherited from camitk::Component
enum	Representation { GEOMETRY, SLICE, NO_REPRESENTATION }

Public Types inherited from camitk::InterfaceGeometry
enum	EnhancedMode { Normal = 0x0, Hidden = 0x1, Shaded = 0x2, Highlighted = 0x4 }

enum	GlyphType { NoGlyph = 0x0, Sphere = 0x1 }

enum	RenderingMode { None = 0x0, Surface = 0x1, Wireframe = 0x2, Points = 0x4 }

Static Public Member Functions inherited from camitk::MeshComponent
static const QMap< int, QString > &	getFieldNames ()
	static method that returns the FieldType enum as a QString More...

static const QString	getFieldName (const FieldType)
	helper method that returns the field type as a string More...

static const QMap< int, QString > &	getDataTypeNames ()
	static method that returns the DataType enum as a QString More...

static const QString	getDataTypeName (const DataType)
	Helper method that returns the datatype as a string. More...

static const DataType	getDataType (vtkSmartPointer< vtkDataArray >)
	Returns the data type of a data array depending on the number of components of the given data array: More...

static const QString	getDataTypeName (vtkSmartPointer< vtkDataArray >)
	Returns the data type string of an data array depending on the number of components of the given data array: If the number of components is different than 1, 3 and 9 (the managed type SCALARS, VECTORS, TENSORS) then the method returns a string equals to the number of components. More...

static const QString	getSpecificRepresentationName (const SpecificRepresentation)
	Helper method that returns the SpecificRepresentation as a QString. More...

Public Attributes inherited from camitk::Component
	setPointSet

vtkSmartPointer< vtkPointSet >	getDataPort

vtkSmartPointer< vtkPointSet > vtkSmartPointer< vtkAlgorithmOutput >	getActor

vtkSmartPointer< vtkPointSet > vtkSmartPointer< vtkAlgorithmOutput >	vtkSmartPointer< vtkActor >

	setRenderingModes

	setActorColor

const	RenderingModes

const const	double

const const const	double

	setColor

const	double

const const const const double	getActorOpacity

const const const const double	double

const const const const double const RenderingModes	setMapperScalarRange

const const const const double const RenderingModes	double

const const const const double const RenderingModes double const double	size = 0.0) override

	setMeshWorldTransform

	setOriginalVolume

vtkSmartPointer< vtkImageData >	get3DImageActor

vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor >	getPixelActor

vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane	setSlice

vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane	double

vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double	setPixelRealPosition

vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double	double

vtkSmartPointer< vtkImageData > vtkSmartPointer< vtkImageActor > vtkSmartPointer< vtkActor > updatePickPlane double double	setArbitraryTransform

resetTransform	rotate

resetTransform	double

resetTransform double	setTransformTranslation

resetTransform double	double

resetTransform double double	setTransformRotation

resetTransform double double	double

	removeFrameChild

Protected Slots inherited from camitk::MeshComponent
void	changeSelectedSelection (const QItemSelection &selected, const QItemSelection &deselected)
	called when the selection is modified More...

void	displayTypePolicyChanged (int)
	called when the datatype for vector data is modified (refresh the data model) More...

void	removeSelectedData ()
	remove the selected selection More...

void	removeSelectedSelections ()
	remove the selected selection More...

void	vectorRepresentationPolicyChanged (int)
	called when the representation for vector data is modified (remove all actors and refresh the data model) More...

Protected Attributes inherited from camitk::Component
ComponentList	childrenComponent
	The explorer sub items. More...

unsigned int	indexOfPropertyExplorerTab
	The PropertyExplorer tab index to select once refreshed. More...

bool	isSelectedFlag
	tells if this particular Component is selected or not More...

bool	modifiedFlag
	the modification flag (could be extended to manage a undo/redo list) More...

QString	myFileName
	the file name from which the Component is loaded More...

InterfaceFrame *	myFrame
	myFrame is the pose (position and orientation) of the Component in the world frame, the Component delegates all InterfaceFrame activity to myFrame (delegation pattern) More...

InterfaceGeometry *	myGeometry
	myGeometry is the 3d representation of this Component, the Component delegates all InterfaceGeometry activity to myGeometry (delegation pattern) More...

InterfaceNode *	myParentNode
	who is the boss? The Component! More...

InterfaceBitMap *	mySlice
	mySlice is the slice representation of this data component, the Component delegates all InterfaceBitMap activity to mySlice (delegation pattern) More...

Detailed Description

This class manages a physical model (PML) CamiTK component.

This class inherits from camitk::MeshComponent. It creates the 3D VTK structures corresponding to the PML structures (atoms, cells, structural components), allows to quickly selecting PML element and highlight them in the 3D structure (using vtkSelection extractors) and display usefull PML properties (given as XML attributes in the PML files) as

See also: camitk::Property.

Note: There are several vtkSelection extractor (2 per structural component in the PML structure). One for the POINTS selection (the atoms) and one for the CELLS (the PML Cells). They are configured to display the corresponding selection in the Structural Component color property (if provided).; The action PMLExploreAction uses this selection methods to allows selecting PML structure elements throught a simple tree view widget.

Constructor & Destructor Documentation

◆ PMLComponent() [1/2]

PMLComponent::PMLComponent ( const QString & file )

Construct the PML component directly from the .pml xml file.

This method may throw an AbortException if a problem occurs.

Parameters

file	The input .pml xml file to build the physical model from.

References init(), and PMLAbortException::what().

Here is the call graph for this function:

◆ PMLComponent() [2/2]

PMLComponent::PMLComponent	(	PhysicalModel *	p,
		const QString &	originalFile
	)

Create the PML component directly from the PhysicalModel (also have to give the original pml filename)

Parameters

p	the physicalModel (already instantiated and build)
originalFile	the filename from which p was build

References init().

Here is the call graph for this function:

◆ ~PMLComponent()

PMLComponent::~PMLComponent ( )

virtual

destructor

References atomPointIdMap, and physicalModel.

Member Function Documentation

◆ addSelection()

int PMLComponent::addSelection	(	const QString &	name,
		int	fieldType,
		int	contentType,
		vtkSmartPointer< vtkAbstractArray >	array,
		camitk::MeshSelectionModel::InsertionPolicy	policy = `camitk::MeshSelectionModel::REPLACE`
	)

virtual

Add a selection (inherited from MeshComponent inorder to show a glyph on selected atoms).

If the name of the selection already exists, the data of the existing selection are updated according to the SelectionPolicy flag.

Parameters

name	name of the selection
fieldType	field type of the selection (one of vtkSelectionNode::SelectionField)
contentType	content type (one of vtkSelectionNode::SelectionContent)
array	array of the selection
policy	policy to update the existing selection

Returns: the index of the added selection in the selection list

Reimplemented from camitk::MeshComponent.

References camitk::MeshComponent::getSelectionIndex(), camitk::policy(), selectedAtomIdArray, and updateSelection().

Here is the call graph for this function:

◆ atomSCToVTK()

vtkSmartPointer< vtkPolyVertex > PMLComponent::atomSCToVTK ( StructuralComponent * sc )

private

Create a 3D vtkPolyVertex of a structural component which ONLY contains atoms ref.

Parameters

sc	The PML structural component object that only contains atoms references.

Returns: a pointor to the vtkCell structure.

Note: this method may be removed as soon as we change the PML XSD schema.; thePoints must not be NULL before calling this method (we create the vtkPolyVertex using points references)

References a, StructuralComponent::getNumberOfStructures(), getPointId(), and StructuralComponent::getStructure().

Referenced by parseMultiComponent().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ cellToVTK()

vtkSmartPointer< vtkCell > PMLComponent::cellToVTK ( Cell * cell )

private

Create a 3D vtkCell corresponding to a structural component's cell.

Parameters

cell	The PML Cell, created by the library pml

Returns: A pointor to the vtkCell structure.

Note: thePoints must not be NULL before calling this method (we create the vtkCell using points references)

References a, StructuralComponent::getNumberOfStructures(), getPointId(), StructuralComponent::getStructure(), Structure::getType(), StructureProperties::HEXAHEDRON, StructureProperties::LINE, StructureProperties::POLY_LINE, StructureProperties::POLY_VERTEX, StructureProperties::PYRAMID, StructureProperties::QUAD, StructureProperties::TETRAHEDRON, StructureProperties::TRIANGLE, and StructureProperties::WEDGE.

Referenced by parseMultiComponent().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ create3DStructure()

void PMLComponent::create3DStructure ( )

private

Create the 3D VTK structure representing the mesh.

References a, atomPointIdMap, camitk::MeshComponent::initRepresentation(), mainGrid, parseMultiComponent(), scCellIdArrayMap, scCellSelectionMap, camitk::Component::setVisibility(), and thePoints.

Referenced by init().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ createAtomSelectionVTKPipeline()

void PMLComponent::createAtomSelectionVTKPipeline ( )

private

Create the VTK selection pipeline (selection, extractor, mapper, actor) needed to represent the selection of atoms.

References camitk::Component::addProp(), camitk::Component::getBoundingRadius(), camitk::Component::getDataPort, camitk::Component::removeProp(), selectedAtomIdArray, selectedAtomSelection, and camitk::Component::vtkSmartPointer< vtkActor >.

Referenced by init().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ createCellSelectionVTKPipeline()

void PMLComponent::createCellSelectionVTKPipeline ( const StructuralComponent * sc )

private

Create a new VTK selection pipeline (selection, extractor, mapper, actor) for a given SC if it does not allready exists.

A VTK selection pipeline is needed to represent the given structural component There is one VTK selection pipeline per SC.

Parameters

sc	the input structural component to create the vtk extract selection from.

References camitk::Component::addProp(), StructuralComponent::getColor(), camitk::Component::getDataPort, Component::getName(), camitk::Component::removeProp(), scCellIdArrayMap, scCellSelectionMap, and camitk::Component::vtkSmartPointer< vtkActor >.

Referenced by selectCell().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ getIcon()

QPixmap PMLComponent::getIcon ( )

virtual

get the pixmap for physical model component

Reimplemented from camitk::MeshComponent.

References myPixmap.

Referenced by PMLExplorerWidget::buildPhysicalModelTreeWidgetItem().

Here is the caller graph for this function:

◆ getPhysicalModel()

PhysicalModel * PMLComponent::getPhysicalModel ( )

References physicalModel.

Referenced by CreateSC::apply(), CreateSC::computeBoundsOfCellIds(), CreateSC::computeBoundsOfPointIds(), CreateSC::getWidget(), PMLExplorerWidget::init(), PMLComponentExtension::save(), Arrows::update(), and Colors::update().

Here is the caller graph for this function:

◆ getPointId()

vtkIdType PMLComponent::getPointId ( const Atom * a )

inline

get the point Id from the corresponding atom, this is the opposite of pml->getAtom(id)

References a, and atomPointIdMap.

Referenced by atomSCToVTK(), cellToVTK(), PMLExplorerWidget::createAtomPropertyList(), selectAtom(), Arrows::update(), and Colors::update().

Here is the caller graph for this function:

◆ init()

void PMLComponent::init ( )

initialize information (properties) and geometric representation from the physical model

References create3DStructure(), createAtomSelectionVTKPipeline(), and neverSelected.

Referenced by CreateSC::apply(), and PMLComponent().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ initDynamicProperties()

void PMLComponent::initDynamicProperties ( )

protectedvirtual

create and initialize dynamic properties using the global xml attributes from the PhysicalModel object

References camitk::Component::addProperty(), camitk::Component::setName(), and camitk::Property::setReadOnly().

Here is the call graph for this function:

◆ parseMultiComponent()

void PMLComponent::parseMultiComponent ( MultiComponent * mc )

private

Create the 3D structure of the given MultiComponent and its children (recursively).

Parameters

mc	The MultiComponent to build a 3D structure from.

References atomSCToVTK(), CAMITK_ERROR, cellToVTK(), StructuralComponent::getCell(), MultiComponent::getNumberOfSubComponents(), MultiComponent::getSubComponent(), mainGrid, and Cell::setIndex().

Referenced by create3DStructure().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ refreshDisplay()

void PMLComponent::refreshDisplay ( )

Refresh the display of the component according to the selected 3D items by the user.

It also shades the component so that selection can be visible. Warning: this methods contains a forced/active refresh (breaking CamiTK programming guidelines) DO NOT CALL this method from a component, this method SHOULD ONLY be called from an action Raison d'être : this method force the vtk pipeline updates (needed when, for example, the points moved) and then refresh the 3D viewer. The later is against CamiTK programming guidelines. It is written here (in the component) because it is a helper method for actions that would need to refresh the mesh.

References camitk::InterfaceGeometry::getPointSet(), camitk::Component::myGeometry, camitk::Component::refresh(), and camitk::InterfaceGeometry::setEnhancedModes().

Referenced by PMLExplorerWidget::propertyChanged(), PMLExplorerWidget::selectItems(), and MMLDisplay::updateDisplay().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ selectAtom()

void PMLComponent::selectAtom ( const Atom * atom )

Select the given atom in the 3D structure.

Parameters

atom	The atom to highlight

References getPointId(), and selectedAtomIdArray.

Referenced by selectCell(), PMLExplorerWidget::selectItems(), and selectSC().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ selectCell()

void PMLComponent::selectCell	(	Cell *	cell,
		bool	showAtomGlyph
	)

Select the given cell in the 3D structure.

Parameters

cell	The cell to highlight
showAtomGlyph	if true show the atom glyph

References a, CAMITK_ERROR, createCellSelectionVTKPipeline(), Structure::getIndex(), Component::getName(), StructuralComponent::getNumberOfStructures(), Cell::getParentSC(), StructuralComponent::getStructure(), scCellIdArrayMap, and selectAtom().

Referenced by PMLExplorerWidget::selectItems(), and selectSC().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ selectMC()

void PMLComponent::selectMC	(	MultiComponent *	mc,
		bool	showAtomGlyph
	)

Select the given multi component in the 3D structure by highlighting all its structural components.

Parameters

mc	The multi component to highlight
showAtomGlyph	if true show the atom glyph

References MultiComponent::getNumberOfSubComponents(), MultiComponent::getSubComponent(), and selectSC().

Referenced by PMLExplorerWidget::selectItems().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ selectSC()

void PMLComponent::selectSC	(	StructuralComponent *	sc,
		bool	showAtomGlyph
	)

Select the given structural component in the 3D structure by highlighting all its atoms and cells.

Parameters

sc	The structural component to highlight
showAtomGlyph	if true show the atom glyph

References a, StructuralComponent::ATOMS, StructuralComponent::CELLS, StructuralComponent::composedBy(), StructuralComponent::getNumberOfStructures(), StructuralComponent::getStructure(), selectAtom(), and selectCell().

Referenced by PMLExplorerWidget::selectItems(), and selectMC().

Here is the call graph for this function:

Here is the caller graph for this function:

◆ setSelected()

void PMLComponent::setSelected	(	const bool	b,
		const bool	recursive = `true`
	)

virtual

Update the selection flag (this method is overridden in order to show the default modeling action when the component is selected for the first time).

Parameters

b	the value of the flag (true means "is selected")
recursive	if true (default), also updates the children Component selection flags.

Reimplemented from camitk::Component.

References camitk::Action::getQAction(), neverSelected, and camitk::Component::setSelected().

Here is the call graph for this function:

◆ unselectItems()

void PMLComponent::unselectItems ( )

Unselect all the SC, MC, Atoms and Cells previously selected on the 3D structure.

References scCellIdArrayMap, and selectedAtomIdArray.

Referenced by PMLExplorerWidget::selectItems().

Here is the caller graph for this function:

◆ updateProperty()

void PMLComponent::updateProperty	(	QString	name,
		QVariant	value
	)

virtual

update top-level properties and synchronize the physical model values

Reimplemented from camitk::MeshComponent.

References Properties::isAField(), and Properties::set().

Here is the call graph for this function:

◆ updateSelection()

void PMLComponent::updateSelection ( )

Update the POINTS and CELLS selection for the whole 3D structure by telling the corresponding extractors new vtkIds have been added to the selection lists.

References scCellIdArrayMap, scCellSelectionMap, selectedAtomIdArray, and selectedAtomSelection.

Referenced by addSelection(), and PMLExplorerWidget::selectItems().

Here is the caller graph for this function:

Member Data Documentation

◆ atomPointIdMap

std::AtomPointIdMap PMLComponent::atomPointIdMap

private

the Atom / vtkPoint Id map

Referenced by create3DStructure(), getPointId(), and ~PMLComponent().

◆ mainGrid

vtkSmartPointer<vtkUnstructuredGrid> PMLComponent::mainGrid

private

The 3D grid containing all the cells of the PML.

Referenced by create3DStructure(), and parseMultiComponent().

◆ myPixmap

QPixmap * PMLComponent::myPixmap = nullptr

staticprivate

the PMLComponent icon

Referenced by getIcon().

◆ neverSelected

bool PMLComponent::neverSelected

private

the first selection should trigger the pml exporer action (default action)

Referenced by init(), and setSelected().

◆ physicalModel

PhysicalModel* PMLComponent::physicalModel

private

The library pml object that uses pmlschema to read the pml information for the xml file.

Referenced by getPhysicalModel(), and ~PMLComponent().

◆ scCellIdArrayMap

QMap<QString, vtkSmartPointer<vtkIdTypeArray> > PMLComponent::scCellIdArrayMap

private

The association structural component <-> vtkIdTypeArray for Cells selection.

Structural component name is the key. scCellIdArrayMap(sc->getName().c_str()) contains the id of all the cells selected in the StructuralComponent sc

Referenced by create3DStructure(), createCellSelectionVTKPipeline(), selectCell(), unselectItems(), and updateSelection().

◆ scCellSelectionMap

QMap<QString, vtkSmartPointer<vtkSelection> > PMLComponent::scCellSelectionMap

private

The association structural component <-> vtkSelection for Cells selection.

Structural component name is the key. scCellSelectionMap(sc->getName().c_str()) manages the vtkSelection of the StructuralComponent sc

Referenced by create3DStructure(), createCellSelectionVTKPipeline(), and updateSelection().

◆ selectedAtomIdArray

vtkSmartPointer<vtkIdTypeArray> PMLComponent::selectedAtomIdArray

private

The vtkIdTypeArray for atom selection (contains all the id array that corresponds to a selected atom)

Referenced by addSelection(), createAtomSelectionVTKPipeline(), selectAtom(), unselectItems(), and updateSelection().

◆ selectedAtomSelection

vtkSmartPointer<vtkSelection> PMLComponent::selectedAtomSelection

private

The vtkSelection for atom selection.

Referenced by createAtomSelectionVTKPipeline(), and updateSelection().

◆ thePoints

vtkSmartPointer<vtkPoints> PMLComponent::thePoints

private

The 3D VTK cloud points of the atoms read.

Referenced by create3DStructure().

The documentation for this class was generated from the following files:

Public Member Functions

Protected Member Functions

Private Attributes

Static Private Attributes

3D structure creation

3D structure element selection

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ PMLComponent() [1/2]

◆ PMLComponent() [2/2]

◆ ~PMLComponent()

Member Function Documentation

◆ addSelection()

◆ atomSCToVTK()

◆ cellToVTK()

◆ create3DStructure()

◆ createAtomSelectionVTKPipeline()

◆ createCellSelectionVTKPipeline()

◆ getIcon()

◆ getPhysicalModel()

◆ getPointId()

◆ init()

◆ initDynamicProperties()

◆ parseMultiComponent()

◆ refreshDisplay()

◆ selectAtom()

◆ selectCell()

◆ selectMC()

◆ selectSC()

◆ setSelected()

◆ unselectItems()

◆ updateProperty()

◆ updateSelection()

Member Data Documentation

◆ atomPointIdMap

◆ mainGrid

◆ myPixmap

◆ neverSelected

◆ physicalModel

◆ scCellIdArrayMap

◆ scCellSelectionMap

◆ selectedAtomIdArray

◆ selectedAtomSelection

◆ thePoints