Atom.h

Go to the documentation of this file.

/*****************************************************************************
 * $CAMITK_LICENCE_BEGIN$
 *
 * CamiTK - Computer Assisted Medical Intervention ToolKit
 * (c) 2001-2021 Univ. Grenoble Alpes, CNRS, Grenoble INP, TIMC, 38000 Grenoble, France
 *
 * Visit http://camitk.imag.fr for more information
 *
 * This file is part of CamiTK.
 *
 * CamiTK is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Lesser General Public License version 3
 * only, as published by the Free Software Foundation.
 *
 * CamiTK is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Lesser General Public License version 3 for more details.
 *
 * You should have received a copy of the GNU Lesser General Public License
 * version 3 along with CamiTK.  If not, see <http://www.gnu.org/licenses/>.
 *
 * $CAMITK_LICENCE_END$
 ****************************************************************************/
 
#ifndef ATOM_H
#define ATOM_H
 
#include <string>
 
#include "Structure.h"
#include "AtomProperties.h"
#include "RenderingMode.h"
 
//pmlschema forward declarations
namespace physicalModel {
class Atom;
}
 
class Atom : public Structure {
public:
    Atom(PhysicalModel* myPM);
 
    Atom(PhysicalModel* myPM,  physicalModel::Atom atom, unsigned int id = -1);
 
    Atom(PhysicalModel* myPM, const double pos[3]);
 
    Atom(PhysicalModel* myPM, const unsigned int ind);
 
    Atom(PhysicalModel* myPM, const unsigned int ind, const double pos[3]);
 
    ~Atom() override;
 
    void xmlPrint(std::ostream&, const StructuralComponent*) override;
 
    void getPosition(double pos[3]) const;
 
    void setPosition(const double [3]);
 
    void setPosition(const double, const double, const double);
 
    bool setIndex(const unsigned int) override;
 
    unsigned int getIndexInAtoms() const;
 
    bool isInstanceOf(const char*) const override;
 
    AtomProperties* getProperties() const;
 
private:
    unsigned int indexInAtoms;
};
 
// -------------------- inline ---------------------
inline void Atom::getPosition(double p[3]) const {
    return getProperties()->getPosition(p);
}
 
inline void Atom::setPosition(const double pos[3])  {
    getProperties()->setPosition(pos);
}
inline void Atom::setPosition(const double x, const double y, const double z)  {
    getProperties()->setPosition(x, y, z);
}
 
inline bool Atom::isInstanceOf(const char* className) const {
    return (std::string(className) == std::string("Atom"));
}
inline AtomProperties* Atom::getProperties() const {
    return (AtomProperties*) properties;
}
 
#endif //ATOM_H