A cell has an unique index in the physical model object, is composed by atoms, and different basic properties. More...

#include <Cell.h>

Inheritance diagram for Cell:

Collaboration diagram for Cell:

Public Member Functions
void	addStructuralComponent (StructuralComponent *) override
	add a particular StructuralComponent in the list (and set parentSC if null)

	Cell (PhysicalModel *myPM, const StructureProperties::GeometricType t)
	constructor that generates a unique index

	Cell (PhysicalModel *myPM, const StructureProperties::GeometricType t, const unsigned int ind)
	When you know the index of the cell, use this constructor.

	Cell (PhysicalModel myPM, physicalModel::Cell xmlCell, StructuralComponent sc)
	constructor from xml node: try to read and get the parameters from xml

StructuralComponent::ComposedBy	composedBy () override
	overloaded from Structural component, always return StructuralComponent::ATOMS

void	deleteAllStructures () override
	This method overload the one defined in StructuralComponent.

const StructuralComponent *	getParentSC ()
	Get the direct parent structural that own this cell.

CellProperties *	getProperties ()
	return the property

StructuralComponent *	getQuadFaces ()
	Return a new structural component directly representing the Cell as a list of quad faces (when possible)

StructuralComponent *	getTriangleFaces ()
	Return a new structural component directly representing the Cell as a list of triangular faces (when possible)

bool	isInstanceOf (const char *) const override
	return true only if the parameter is equal to "MultiComponent"

bool	makePrintData (const StructuralComponent *)
	is this sc the one that will be the one that will make the cell to print out all its data or is this a sc that will just print out the cell ref?

double *	normal ()
	compute the normal of the facet Warning : Only available for QUAD and TRIANGLE type cells

bool	setIndex (const unsigned int) override
	set the index.

double	signedVolumeTriangle (double p1[3], double p2[3], double p3[3])
	Compute the volume of a triangle with the origin of the coordinate system.

double	surface ()
	Compute the surface of the cell.

double	volume ()
	Compute the volume of the cell.

void	xmlPrint (std::ostream &, const StructuralComponent *) override
	print to an output stream in "pseudo" XML format.

	~Cell () override
	the destructor, my tailor. BECAREFUL: the atoms should not not be deleted here...

Public Member Functions inherited from Structure
std::vector< StructuralComponent * >	getAllStructuralComponents ()
	get the list of all the StructuralComponent that are using this structure

unsigned int	getIndex () const
	get the structure unique index (stored in its property)

std::string	getName () const
	get the name of the structure

unsigned int	getNumberOfStructuralComponents () const
	get the number of StructuralComponent that are using this structure

StructuralComponent *	getStructuralComponent (unsigned int i)
	get a particular StructuralComponent that is using this structure

StructureProperties::GeometricType	getType () const
	get the type of index

void	removeStructuralComponent (StructuralComponent *)
	remove a particular StructuralComponent from the list

void	setName (std::string)
	set the name of the structure

virtual void	setPhysicalModel (PhysicalModel *)
	set the physical model

	Structure ()
	Base constructor.

virtual	~Structure ()=default
	Virtual destructor needed here as this is an abstract class (pure virtual)

Public Member Functions inherited from StructuralComponent
void	addStructure (Structure *s, bool check=true)
	Add a Structure in the list (and tells the structure to add this structural component in its list).

bool	addStructureIfNotIn (Structure *s)
	Add a Structure in the list, only if it is not already in (and in this case tells the structure to add this structural component to its list).

StructuralComponent *	getAtoms ()
	Return a StructuralComponent with all the atoms of this structural component.

Cell *	getCell (unsigned int) const override
	get cell by order number (not cell index)

double *	getColor () const
	Get the color.

void	getColor (double r, double g, double b, double a) const
	Get the color by its 4 componants r,g,b and a.

RenderingMode::Mode	getMode () const
	get the rendering mode

unsigned int	getNumberOfCells () const override
	get the total nr of cell of the component

unsigned int	getNumberOfStructures () const
	get the number of structures

StructuralComponentProperties *	getProperties ()
	get the structural component properties of this SC

StructuralComponentProperties::Color	getStructuralComponentPropertiesColor () const
	Return the color as a code (see StructuralComponentProperties::Color enum)

Structure *	getStructure (const unsigned int) const
	get a structure by its index (fisrt structure is at index 0)

Structure *	getStructureByIndex (const unsigned int)
	get a structure by its unique index

Structure *	getStructureByName (const std::string)
	get a structure by its name

bool	isCompatible (Structure *)
	return true if the given structure is compatible with what composes this structural component.

bool	isInstanceOf (const char *) const override
	return true only if the parameter is equal to "StructuralComponent"

bool	isStructureIn (Structure *s)
	Check if a given structure is present in the list.

bool	isVisible (const RenderingMode::Mode mode) const override
	tell if a specific rendering mode is visible or not

void	plannedNumberOfStructures (const unsigned int)
	optimize the I/O of the std:vector structures.

virtual void	removeStructure (Structure *s)
	Remove a structure from the list (and tells the structure to remove this structural component from its list).

void	setColor (const double r, const double b, const double g)
	Set the new RGB color.

void	setColor (const double r, const double b, const double g, const double a)
	Set the new RGBA color.

void	setColor (const StructuralComponentProperties::Color c)
	Set the new color (using a StructuralComponentProperties::Color enum)

void	setMode (const RenderingMode::Mode)
	set the rendering mode

void	setPhysicalModel (PhysicalModel *) override
	set the physical model (recursively to all cells or to all atoms)

void	setVisible (const RenderingMode::Mode mode, const bool b) override
	set the visibility of a specific rendering mode

	StructuralComponent (PhysicalModel *)
	Default Constructor.

	StructuralComponent (PhysicalModel *, std::string)
	constructor that allows one to name the structure.

	StructuralComponent (PhysicalModel *p, physicalModel::StructuralComponent xmlSC)
	constructor from xml node: try to read and get the parmaters from xml

void	xmlPrint (std::ostream &) const override
	print to an output stream in "pseudo" XML format (do nothing if there are no sub structures).

	~StructuralComponent () override
	delete all the structures (call the deleteAllStructures method)

Public Member Functions inherited from Component
	Component (PhysicalModel *, std::string n="")
	Default constructor, a component needs to know the PM it is in.

const std::string	getName () const
	get the name of the component

bool	isExclusive () const
	tell if this component is exclusive or not

void	setExclusive (const bool)
	set the exclusive flag

void	setName (const std::string)
	set the name of the component

virtual	~Component ()
	Virtual destructor needed here as this is an abstract class (pure virtual)

std::vector< MultiComponent * >	getAllParentMultiComponents ()
	get the list of all the Multi Component that are using this Component

unsigned int	getNumberOfParentMultiComponents () const
	get the number of MultiComponent that are using this Component (= nr of parent component)

MultiComponent *	getParentMultiComponent (unsigned int)
	get a particular MultiComponent that is using this Component (a particular parent component)

void	addParentMultiComponent (MultiComponent *)
	add a particular parent MultiComponent in the list

void	removeParentMultiComponent (MultiComponent *)
	remove a particular parent MultiComponent

PhysicalModel *	getPhysicalModel () const
	get the physical model

Properties *	getProperties ()
	get the component structural properties (guarantied to be non nullptr)

Additional Inherited Members
Public Types inherited from StructuralComponent
enum	ComposedBy { NOTHING , CELLS , ATOMS }
	What this structural component is made of. More...

Public Attributes inherited from Structure
bool	hasIndex
	indicate if the Structure has an index (which is not the case all the time)

Protected Member Functions inherited from Component
void	removeFromParents ()
	this tell the parent components that this component is removed from memory.

void	deleteProperties ()
	delete the "properties" pointer and set it to nullptr

Protected Attributes inherited from Structure
StructureProperties *	properties {nullptr}
	Property of the current structure.

Protected Attributes inherited from StructuralComponent
StructuralComponent *	atomList
	List of all the atoms of this structural component, build the first time.

std::vector< Structure * >	structures
	List of the structure representing this component, all the structure in this list are either all Atom or all Cell (no mix!)

Protected Attributes inherited from Component
Properties *	properties

Detailed Description

A cell has an unique index in the physical model object, is composed by atoms, and different basic properties.

It is the most basic component composing a physical model.

Constructor & Destructor Documentation

◆ Cell() [1/3]

Cell::Cell	(	PhysicalModel *	myPM,
		const StructureProperties::GeometricType	t
	)

constructor that generates a unique index

Parameters

myPM	the physical model the atom belongs to
t	the type of the cell

References Structure::properties.

◆ Cell() [2/3]

Cell::Cell	(	PhysicalModel *	myPM,
		physicalModel::Cell	xmlCell,
		StructuralComponent *	sc
	)

constructor from xml node: try to read and get the parameters from xml

Parameters

myPM	the physical model the atom belongs to
xmlCell	the xml node to read to get the information
sc	the direct parent structural component that owns this cell

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◆ Cell() [3/3]

Cell::Cell	(	PhysicalModel *	myPM,
		const StructureProperties::GeometricType	t,
		const unsigned int	ind
	)

When you know the index of the cell, use this constructor.

Parameters

myPM	the physical model the atom belongs to
t	the type of the cell
ind	give the unique index

References Structure::properties.

◆ ~Cell()

Cell::~Cell ( )

override

the destructor, my tailor. BECAREFUL: the atoms should not not be deleted here...

References StructuralComponent::atomList, deleteAllStructures(), Component::deleteProperties(), Structure::properties, and Component::removeFromParents().

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Member Function Documentation

◆ addStructuralComponent()

void Cell::addStructuralComponent ( StructuralComponent * sc )

inlineoverridevirtual

add a particular StructuralComponent in the list (and set parentSC if null)

Reimplemented from Structure.

References Structure::addStructuralComponent().

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◆ composedBy()

Cell::ComposedBy Cell::composedBy ( )

inlineoverridevirtual

overloaded from Structural component, always return StructuralComponent::ATOMS

Reimplemented from StructuralComponent.

References StructuralComponent::ATOMS.

◆ deleteAllStructures()

void Cell::deleteAllStructures ( )

overridevirtual

This method overload the one defined in StructuralComponent.

The difference here is that the atoms composing the cell ARE NOT delete, still the list is cleared. After a call to this method getNumberOfSubStructures() should return 0

Reimplemented from StructuralComponent.

References StructuralComponent::structures.

Referenced by ~Cell().

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◆ getParentSC()

const StructuralComponent * Cell::getParentSC ( )

inline

Get the direct parent structural that own this cell.

Referenced by PMLComponent::selectCell().

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◆ getProperties()

CellProperties * Cell::getProperties ( )

return the property

References Structure::properties.

Referenced by Reference::getDistanceToTriangularMesh(), getQuadFaces(), getTriangleFaces(), normal(), surface(), and volume().

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◆ getQuadFaces()

StructuralComponent * Cell::getQuadFaces ( )

Return a new structural component directly representing the Cell as a list of quad faces (when possible)

References StructuralComponent::addStructure(), Component::getPhysicalModel(), getProperties(), StructuralComponent::getStructure(), Structure::getType(), StructureProperties::HEXAHEDRON, StructureProperties::QUAD, and StructureProperties::WEDGE.

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◆ getTriangleFaces()

StructuralComponent * Cell::getTriangleFaces ( )

Return a new structural component directly representing the Cell as a list of triangular faces (when possible)

References StructuralComponent::addStructure(), Component::getPhysicalModel(), getProperties(), StructuralComponent::getStructure(), Structure::getType(), StructureProperties::HEXAHEDRON, StructureProperties::QUAD, StructureProperties::TETRAHEDRON, StructureProperties::TRIANGLE, and StructureProperties::WEDGE.

Referenced by surface(), and volume().

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◆ isInstanceOf()

bool Cell::isInstanceOf ( const char * className ) const

inlineoverridevirtual

return true only if the parameter is equal to "MultiComponent"

Implements Structure.

◆ makePrintData()

bool Cell::makePrintData ( const StructuralComponent * sc )

is this sc the one that will be the one that will make the cell to print out all its data or is this a sc that will just print out the cell ref?

References Structure::getNumberOfStructuralComponents(), Structure::getStructuralComponent(), and Component::isExclusive().

Referenced by xmlPrint().

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◆ normal()

double * Cell::normal ( )

compute the normal of the facet Warning : Only available for QUAD and TRIANGLE type cells

References getProperties(), StructuralComponent::getStructure(), Structure::getType(), StructureProperties::QUAD, and StructureProperties::TRIANGLE.

Referenced by surface(), and volume().

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◆ setIndex()

bool Cell::setIndex ( const unsigned int index )

overridevirtual

set the index.

The index have to be unique otherwise this method has no effect. The sub-classes method will check that this index is not in use.

Returns: true only if the index of the structure was changed

Reimplemented from Structure.

References PhysicalModel::addGlobalIndexCellPair(), Component::getPhysicalModel(), and Structure::setIndex().

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◆ signedVolumeTriangle()

double Cell::signedVolumeTriangle	(	double	p1[3],
		double	p2[3],
		double	p3[3]
	)

Compute the volume of a triangle with the origin of the coordinate system.

If the triangle is A,B,C it computes the volume of the tetrahedron OABC.

See also: Zhang, C., and Chen, T., Efficient feature extraction for 2D/3D objects in mesh representation

Parameters

p1	position of Triangle Atom
p2	position of Triangle Atom
p3	position of Triangle Atom

Returns: double a signed volume

Referenced by volume().

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◆ surface()

double Cell::surface ( )

Compute the surface of the cell.

References StructuralComponent::getCell(), StructuralComponent::getNumberOfCells(), StructuralComponent::getNumberOfStructures(), getProperties(), StructuralComponent::getStructure(), getTriangleFaces(), Structure::getType(), normal(), surface(), and StructureProperties::TRIANGLE.

Referenced by MonitorSurface::calculate(), surface(), and volume().

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◆ volume()

double Cell::volume ( )

Compute the volume of the cell.

References StructuralComponent::getCell(), StructuralComponent::getNumberOfCells(), getProperties(), StructuralComponent::getStructure(), getTriangleFaces(), Structure::getType(), normal(), StructureProperties::QUAD, signedVolumeTriangle(), surface(), and StructureProperties::TRIANGLE.

Referenced by MonitorVolume::calculate().

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◆ xmlPrint()

void Cell::xmlPrint	(	std::ostream &	o,
		const StructuralComponent *	sc
	)

overridevirtual

print to an output stream in "pseudo" XML format.

If the StructuralComponent that calls this method is not the first in the list of composing SC, then a cellRef tag is printed (otherwise the list of atom is printed).

Implements Structure.

References StructuralComponentProperties::DEFAULT, StructuralComponent::getColor(), Structure::getIndex(), makePrintData(), Component::properties, Structure::properties, and StructuralComponent::structures.

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The documentation for this class was generated from the following files:

Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ Cell() [1/3]

◆ Cell() [2/3]

◆ Cell() [3/3]

◆ ~Cell()

Member Function Documentation

◆ addStructuralComponent()

◆ composedBy()

◆ deleteAllStructures()

◆ getParentSC()

◆ getProperties()

◆ getQuadFaces()

◆ getTriangleFaces()

◆ isInstanceOf()

◆ makePrintData()

◆ normal()

◆ setIndex()

◆ signedVolumeTriangle()

◆ surface()

◆ volume()

◆ xmlPrint()